update docs to last version

docs/Pre/classes.html

@@ -2583,19 +2583,22 @@ forgotten</li>
 <tr class="row-even"><td><a class="reference internal" href="#pylmgc90.pre_lmgc.mesh.addNode" title="pylmgc90.pre_lmgc.mesh.addNode"><tt class="xref py py-obj docutils literal"><span class="pre">addNode</span></tt></a>(noeud)</td>
 <td>addNode(noeud):</td>
 </tr>
-<tr class="row-odd"><td><a class="reference internal" href="#pylmgc90.pre_lmgc.mesh.buildMeshedAvatar" title="pylmgc90.pre_lmgc.mesh.buildMeshedAvatar"><tt class="xref py py-obj docutils literal"><span class="pre">buildMeshedAvatar</span></tt></a>(model,&nbsp;material)</td>
-<td>buildMeshedAvatar(self, model, material):</td>
+<tr class="row-odd"><td><a class="reference internal" href="#pylmgc90.pre_lmgc.mesh.computeNormal" title="pylmgc90.pre_lmgc.mesh.computeNormal"><tt class="xref py py-obj docutils literal"><span class="pre">computeNormal</span></tt></a>(n,&nbsp;e,&nbsp;reverse)</td>
+<td>Compute normal of a node of an element</td>
 </tr>
-<tr class="row-even"><td><a class="reference internal" href="#pylmgc90.pre_lmgc.mesh.getSubMeshes" title="pylmgc90.pre_lmgc.mesh.getSubMeshes"><tt class="xref py py-obj docutils literal"><span class="pre">getSubMeshes</span></tt></a>([entity_type])</td>
+<tr class="row-even"><td><a class="reference internal" href="#pylmgc90.pre_lmgc.mesh.extrudePhysicalEntity" title="pylmgc90.pre_lmgc.mesh.extrudePhysicalEntity"><tt class="xref py py-obj docutils literal"><span class="pre">extrudePhysicalEntity</span></tt></a>(pE,&nbsp;length[,&nbsp;reverse])</td>
+<td>Extrude an external layer of mesh.</td>
+</tr>
+<tr class="row-odd"><td><a class="reference internal" href="#pylmgc90.pre_lmgc.mesh.getSubMeshes" title="pylmgc90.pre_lmgc.mesh.getSubMeshes"><tt class="xref py py-obj docutils literal"><span class="pre">getSubMeshes</span></tt></a>([entity_type])</td>
 <td>getSubMeshes(self, entity_type=&#8221;geometricalEntity&#8221;):</td>
 </tr>
-<tr class="row-odd"><td><a class="reference internal" href="#pylmgc90.pre_lmgc.mesh.rankRenumbering" title="pylmgc90.pre_lmgc.mesh.rankRenumbering"><tt class="xref py py-obj docutils literal"><span class="pre">rankRenumbering</span></tt></a>()</td>
+<tr class="row-even"><td><a class="reference internal" href="#pylmgc90.pre_lmgc.mesh.rankRenumbering" title="pylmgc90.pre_lmgc.mesh.rankRenumbering"><tt class="xref py py-obj docutils literal"><span class="pre">rankRenumbering</span></tt></a>()</td>
 <td>rankRenumbering(self):</td>
 </tr>
-<tr class="row-even"><td><a class="reference internal" href="#pylmgc90.pre_lmgc.mesh.removeFreeNodes" title="pylmgc90.pre_lmgc.mesh.removeFreeNodes"><tt class="xref py py-obj docutils literal"><span class="pre">removeFreeNodes</span></tt></a>(self)</td>
+<tr class="row-odd"><td><a class="reference internal" href="#pylmgc90.pre_lmgc.mesh.removeFreeNodes" title="pylmgc90.pre_lmgc.mesh.removeFreeNodes"><tt class="xref py py-obj docutils literal"><span class="pre">removeFreeNodes</span></tt></a>(self)</td>
 <td>removes nodes not attached to an element</td>
 </tr>
-<tr class="row-odd"><td><a class="reference internal" href="#pylmgc90.pre_lmgc.mesh.separateMeshes" title="pylmgc90.pre_lmgc.mesh.separateMeshes"><tt class="xref py py-obj docutils literal"><span class="pre">separateMeshes</span></tt></a>(dim[,&nbsp;entity_type,&nbsp;...])</td>
+<tr class="row-even"><td><a class="reference internal" href="#pylmgc90.pre_lmgc.mesh.separateMeshes" title="pylmgc90.pre_lmgc.mesh.separateMeshes"><tt class="xref py py-obj docutils literal"><span class="pre">separateMeshes</span></tt></a>(dim[,&nbsp;entity_type,&nbsp;...])</td>
 <td>separateMeshes(self, dim, entity_type=&#8221;geometricalEntity&#8221;):</td>
 </tr>
 </tbody>
@@ -2625,16 +2628,26 @@ forgotten</li>
 </dd></dl>
 
 <dl class="method">
-<dt id="pylmgc90.pre_lmgc.mesh.buildMeshedAvatar">
-<tt class="descname">buildMeshedAvatar</tt><big>(</big><em>model</em>, <em>material</em><big>)</big><a class="headerlink" href="#pylmgc90.pre_lmgc.mesh.buildMeshedAvatar" title="Permalink to this definition">¶</a></dt>
-<dd><p>buildMeshedAvatar(self, model, material):</p>
-<p>this function builds a meshed avatar from the mesh.</p>
-<p>parameters:</p>
-<ul class="simple">
-<li>self: the mesh itself</li>
-<li>model: a given model</li>
-<li>material: a given material</li>
-</ul>
+<dt id="pylmgc90.pre_lmgc.mesh.computeNormal">
+<tt class="descname">computeNormal</tt><big>(</big><em>n</em>, <em>e</em>, <em>reverse</em><big>)</big><a class="headerlink" href="#pylmgc90.pre_lmgc.mesh.computeNormal" title="Permalink to this definition">¶</a></dt>
+<dd><p>Compute normal of a node of an element</p>
+</dd></dl>
+
+<dl class="method">
+<dt id="pylmgc90.pre_lmgc.mesh.extrudePhysicalEntity">
+<tt class="descname">extrudePhysicalEntity</tt><big>(</big><em>pE</em>, <em>length</em>, <em>reverse=False</em><big>)</big><a class="headerlink" href="#pylmgc90.pre_lmgc.mesh.extrudePhysicalEntity" title="Permalink to this definition">¶</a></dt>
+<dd><p>Extrude an external layer of mesh.</p>
+<p>This functions use the nodes of a physical entity
+to create the node extrusion and the corresponding element
+in the mesh. Linear elements only !!! Physical entities are
+created with prefix &#8216;E&#8217; for the extruded elements and &#8216;P&#8217;
+for the projected nodes.</p>
+<p>To work, the rankRenumbering function must have been called beforehand,
+and the elements correctly oriented. At this time only &#8216;S2xxx&#8217; and &#8216;T3xxx&#8217;
+element are supported.</p>
+<p>parameters:
+- pE : physical entity name to extrude from
+- length : size of extrusion along the computed normals</p>
 </dd></dl>
 
 <dl class="method">

docs/Pre/genindex.html

@@ -176,12 +176,6 @@
   <dt><a href="classes.html#pylmgc90.pre_lmgc.buildMeshedAvatar">buildMeshedAvatar() (in module pylmgc90.pre_lmgc)</a>
   </dt>
 
-      <dd><dl>
-        
-  <dt><a href="classes.html#pylmgc90.pre_lmgc.mesh.buildMeshedAvatar">(pylmgc90.pre_lmgc.mesh method)</a>
-  </dt>
-
-      </dl></dd>
       
   <dt><a href="classes.html#pylmgc90.pre_lmgc.buildMeshH8">buildMeshH8() (in module pylmgc90.pre_lmgc)</a>
   </dt>
@@ -231,6 +225,10 @@
   </dt>
 
       
+  <dt><a href="classes.html#pylmgc90.pre_lmgc.mesh.computeNormal">computeNormal() (pylmgc90.pre_lmgc.mesh method)</a>
+  </dt>
+
+      
   <dt><a href="classes.html#pylmgc90.pre_lmgc.avatar.computeRigidProperties">computeRigidProperties() (pylmgc90.pre_lmgc.avatar method)</a>
   </dt>
 
@@ -337,6 +335,10 @@
   </dl></td>
   <td style="width: 33%" valign="top"><dl>
       
+  <dt><a href="classes.html#pylmgc90.pre_lmgc.mesh.extrudePhysicalEntity">extrudePhysicalEntity() (pylmgc90.pre_lmgc.mesh method)</a>
+  </dt>
+
+      
   <dt><a href="classes.html#pylmgc90.pre_lmgc.extrudeRigid">extrudeRigid() (in module pylmgc90.pre_lmgc)</a>
   </dt>
 

docs/Pre/material.html

@@ -84,7 +84,7 @@ the type.</p>
 <div class="section" id="visco-elas-type">
 <h2>VISCO_ELAS type:<a class="headerlink" href="#visco-elas-type" title="Permalink to this headline">¶</a></h2>
 <p>visco elastic material</p>
-<div class="highlight-python"><div class="highlight"><pre><span class="n">steel</span> <span class="o">=</span> <span class="n">material</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s">&#39;steel&#39;</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s">&#39;VISCO_PLAS&#39;</span><span class="p">,</span> <span class="n">density</span><span class="o">=</span><span class="mf">8.93e3</span><span class="p">,</span>
+<div class="highlight-python"><div class="highlight"><pre><span class="n">steel</span> <span class="o">=</span> <span class="n">material</span><span class="p">(</span><span class="n">name</span><span class="o">=</span><span class="s">&#39;steel&#39;</span><span class="p">,</span> <span class="nb">type</span><span class="o">=</span><span class="s">&#39;VISCO_ELAS&#39;</span><span class="p">,</span> <span class="n">density</span><span class="o">=</span><span class="mf">8.93e3</span><span class="p">,</span>
                  <span class="n">elas</span><span class="o">=</span><span class="s">&#39;standard&#39;</span><span class="p">,</span> <span class="n">anisotropy</span><span class="o">=</span><span class="s">&#39;isotropic&#39;</span><span class="p">,</span> <span class="n">young</span><span class="o">=</span><span class="mf">1.17e11</span><span class="p">,</span> <span class="n">nu</span><span class="o">=</span><span class="mf">0.35</span><span class="p">,</span>
                  <span class="n">viscous_model</span><span class="o">=</span><span class="s">&#39;KelvinVoigt&#39;</span><span class="p">,</span> <span class="n">viscous_young</span><span class="o">=</span><span class="mf">1.17e9</span><span class="p">,</span> <span class="n">viscous_nu</span><span class="o">=</span><span class="mf">0.35</span><span class="p">)</span>
 </pre></div>

docs/Pre/model.html

@@ -99,7 +99,8 @@
 <li>anisotropy : &#8216;<a href="#id1"><span class="problematic" id="id2">iso__</span></a>&#8216;, &#8216;ortho&#8217;</li>
 <li>external_model : &#8216;<a href="#id1"><span class="problematic" id="id3">yes__</span></a>&#8216;, &#8216;no___&#8217;</li>
 <li>discrete : &#8216;<a href="#id1"><span class="problematic" id="id4">yes__</span></a>&#8216;, &#8216;no___&#8217;</li>
-<li>ext_f</li>
+<li>external_fields : list of string</li>
+<li>external_vfields : list of string</li>
 </ul>
 </div></blockquote>
 <p>Example</p>
@@ -135,7 +136,8 @@
 <li>formulation : &#8216;class&#8217;, &#8216;stdvf&#8217;, &#8216;linvf&#8217;</li>
 <li>external_model : &#8216;<a href="#id1"><span class="problematic" id="id5">yes__</span></a>&#8216;, &#8216;no___&#8217;</li>
 <li>convection_type : &#8216;<a href="#id16"><span class="problematic" id="id17">supg_</span></a>&#8216;,&#8217;cente&#8217;</li>
-<li>ext_f</li>
+<li>external_fields : list of string</li>
+<li>external_vfields : list of string</li>
 </ul>
 </div></blockquote>
 <p>Example</p>
@@ -176,7 +178,8 @@
 <li>capacity_storage : &#8216;<a href="#id24"><span class="problematic" id="id25">lump_</span></a>&#8216;, &#8216;coher&#8217;</li>
 <li>convection_type  : &#8216;<a href="#id26"><span class="problematic" id="id27">supg_</span></a>&#8216;, &#8216;<a href="#id28"><span class="problematic" id="id29">char_</span></a>&#8216;,&#8217;center&#8217;</li>
 <li>physical_type: &#8216;fluid&#8217;, &#8216;solid&#8217;</li>
-<li>ext_f</li>
+<li>external_fields : list of string</li>
+<li>external_vfields : list of string</li>
 </ul>
 </div></blockquote>
 <p>Example</p>

docs/chipy/chipy.html

@@ -324,23 +324,29 @@ bodies read from BODIES.DAT and initialize property sets.</p>
 
 <dl class="function">
 <dt id="pylmgc90.chipy.chipy.ReadIniDof">
-<tt class="descclassname">pylmgc90.chipy.chipy.</tt><tt class="descname">ReadIniDof</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/pylmgc90/chipy/chipy.html#ReadIniDof"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pylmgc90.chipy.chipy.ReadIniDof" title="Permalink to this definition">¶</a></dt>
-<dd><p>Read DOF.INI file in DATBOX directory.</p>
-<p>Must be called after LoadBehaviours.</p>
+<tt class="descclassname">pylmgc90.chipy.chipy.</tt><tt class="descname">ReadIniDof</tt><big>(</big><em>step=0</em><big>)</big><a class="reference internal" href="_modules/pylmgc90/chipy/chipy.html#ReadIniDof"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pylmgc90.chipy.chipy.ReadIniDof" title="Permalink to this definition">¶</a></dt>
+<dd><p>Read DOF file.
+If step &gt; 0 read OUTBOX/DOF.OUT.step file,
+otherwise read DATBOX/DOF.INI file
+Must be called after LoadBehaviours.</p>
 </dd></dl>
 
 <dl class="function">
 <dt id="pylmgc90.chipy.chipy.ReadIniGPV">
-<tt class="descclassname">pylmgc90.chipy.chipy.</tt><tt class="descname">ReadIniGPV</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/pylmgc90/chipy/chipy.html#ReadIniGPV"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pylmgc90.chipy.chipy.ReadIniGPV" title="Permalink to this definition">¶</a></dt>
-<dd><p>Read GPV.INI file in DATBOX directory.</p>
-<p>Must be called after LoadModels.</p>
+<tt class="descclassname">pylmgc90.chipy.chipy.</tt><tt class="descname">ReadIniGPV</tt><big>(</big><em>step=0</em><big>)</big><a class="reference internal" href="_modules/pylmgc90/chipy/chipy.html#ReadIniGPV"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pylmgc90.chipy.chipy.ReadIniGPV" title="Permalink to this definition">¶</a></dt>
+<dd><p>Read GPV.INI.
+If step &gt; 0 read OUTBOX/GPV.OUT.step file,
+otherwise read DATBOX/GPV.INI file
+Must be called after LoadModels.</p>
 </dd></dl>
 
 <dl class="function">
 <dt id="pylmgc90.chipy.chipy.ReadIniVlocRloc">
-<tt class="descclassname">pylmgc90.chipy.chipy.</tt><tt class="descname">ReadIniVlocRloc</tt><big>(</big><big>)</big><a class="reference internal" href="_modules/pylmgc90/chipy/chipy.html#ReadIniVlocRloc"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pylmgc90.chipy.chipy.ReadIniVlocRloc" title="Permalink to this definition">¶</a></dt>
-<dd><p>Read VlocRloc.INI file in DATBOX directory.</p>
-<p>Must be called after LoadTactors.</p>
+<tt class="descclassname">pylmgc90.chipy.chipy.</tt><tt class="descname">ReadIniVlocRloc</tt><big>(</big><em>step=0</em><big>)</big><a class="reference internal" href="_modules/pylmgc90/chipy/chipy.html#ReadIniVlocRloc"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#pylmgc90.chipy.chipy.ReadIniVlocRloc" title="Permalink to this definition">¶</a></dt>
+<dd><p>Read VlocRloc file.
+If step &gt; 0 read OUTBOX/VlocRloc.OUT.step file,
+otherwise read DATBOX/VlocRloc.INI file
+Must be called after LoadTactors.</p>
 </dd></dl>
 
 <dl class="function">