2016 release

See merge request !1

7d97efb Merge branch 'frozar_fix' into 'master'
4719110 [FIX] missing detection PRPRx method
6086e2d [FIX] Correct a comment (# was missing).

git-subtree-dir: examples
git-subtree-split: 7d97efbaffb0a982fcf90ab925fbc6c0f787b2e8

53263b1 Merge branch 'for_dummies' into 'master'
d183718 [NAMING] in mecaMAILx_RIGID_3D only command.py file with "for_dummies" commands
3d323d9 [NAMING] in mecaMAILx_RIGID_2D only command.py file with "for_dummies" commands
cfd31fb [NAMING] missed to switch to "for_dummies" in two examples of mecaMAILx_3D
665ba7f [FIX] missing POSTPRO.DAT in gen_sample
cd4f5d8 [FIX] typo in gen_sample
5814138 [FIX] missing POSTPRO.DAT or VlocRloc.INI files in some mecaMAILx_3D examples
0d24450 [FIX] missing VlocRloc.INI file in some mecaMAILx_2D examples
42b0ebf [NAMING] in mcaMAILx_3D only command.py file with "for_dummies" commands
f4bee99 [FIX] WriteDisplayFiles call in dilatation/_umat examples
405a013 [NAMING] in mcaMAILx_2D only command.py file with "for_dummies" commands
eca3adf [FIX] missing numpy import in 2_PR_TH_CZM
cfc3430 [FIX] several minor errors when changing scripts in "for_dummies" format
537ede0 [FIX] missing postpro in gen_samples of POLYF examples
7431bad [FIX] missing chipy. in 2_PR_TH_CZM and donut_skin examples
58df807 [FIX] missing postpro file in arche_plein_ceintre_3D
10ce891 [FIX] missing numpy module in POLYG_Vther
49fd7f9 [NAMING] in RIGID_3D only command.py file with "for_dummies" commands
c69ca53 [FIX] add missing postpro files in POLYG_Vther
4746f2b [NAMING] in RIGID_2D only command.py file with "for_dummies" commands
c11e51b notebook maillage
4eae20a Merge branch 'default_sdl' into 'master'
5ecefc4 [FIX] use of Stored_Delassus_Loop contact solver in every example

git-subtree-dir: examples
git-subtree-split: 53263b146be8dc255ca92f6efbc6986ddea769b5

Getting last examples for CMU course

Getting last dev for CMU course

9035eb4 Merge branch 'sphinx' into 'dev'
26f2338 [DOC] in sphinx doc of chipy, use "from pylmgc90 import chipy" in examples
24010ae Merge branch 'fd_fix_typo' into 'dev'
42b8455 modifs
c9a79cd various small modifications

git-subtree-dir: src
git-subtree-split: 9035eb42c880a0879bd5e4e7c7874472e9881555

b82f1bc [FIX] error in Basis tutorial notebook

git-subtree-dir: examples
git-subtree-split: b82f1bc253e5ba4b40409f4533bf83d8cfea3a0d

Fix error in Basis tutorial notebook

46e2d8a Merge branch 'frozar_arg_parse' into 'dev'
a79dae4 [MISPELLING]
8e75e55 [FIX] arg_parse look ignore unknown arguments in order to keep using our notebooks
REVERT: ff3860f Merge branch 'dev' into 'master'
REVERT: bd15bce Merge branch 'dev' into 'master'
REVERT: ed992f2 Merge branch 'dev' into 'master'
REVERT: 1197b55 Merge branch 'dev' into 'master'
REVERT: ae6c187 Merge branch 'dev' into 'master'

git-subtree-dir: src
git-subtree-split: 46e2d8a7ff67ae6db8f8ff4de372c82729bba10a

Getting fix to use jupyter notebook with LMGC90

b11f3a4 Merge branch 'atelier_detection' into 'master'
af010d4 [FIX] fix PRPR detection workshop examples
a1b34d5 Merge branch 'python_tutorial' into 'master'
8ce589f ajout therMAILx_ComputeThermFields()
5e18053 [DOC] add some exercises in Basis notebook
d4d2358 [DOC] rename notebook in english
bda2865 [DOC] english translation of notebook
d66e3d4 [DOC] adding a new tutorial shorter than the previous ones
02ee377 [DOC] fix typos in english introduction tutorial
f163c55 remove DATBOX
6475861 [DOC] fix typos in english introduction tutorial
158a728 [DOC] translate python_introduction notebook in english
9d47a65 Merge branch 'fix_computeFields' into 'master'
9a2de0a [FIX] ComputeField call before UpdateBulk when using mecaMAILx in Ateliers examples
1c32066 Merge branch 'frozar_delete_datbox' into 'master'
74d02ee [EXAMPLE] Delete the directory 'DATBOX' from directory 'mecaMAILx_2D/dilatation' because there is a script 'gen_sample.py'
d0d34ee Merge branch 'frozar_python_matplotlib' into 'master'
45aaa5c [GEN_SAMPLE] Delete the useless 'import pylab'.
89be9da Merge branch 'frozar_python_vtk' into 'master'
1f3481e [GEN_SAMPLES] Protect the call to visuAvatars() with a 'try ... except ...'
9ae6e91 Merge branch 'jenkins_MsgExit' into 'master'
77f70fb [GEN_SAMPLES] Delete the call to 'Msg.Exit(0)': get the right status at the end of the execution.
f72912d Merge branch 'frozar_issue_1' into 'master'
9424fab [BUGFIX] Close the file descriptors 'fit' and 'fii' and delete the use of 'CloseDisplayFiles()'.
be7261f Changing Stored_Delassus_Loops to Exchange_Local_Global everywhere
19bb6aa maj
967fe17 maj notebook

git-subtree-dir: examples
git-subtree-split: b11f3a46fdf98a04f1243ef0a778d426f60e3d05

2016 release candidate 5

ff3860f Merge branch 'dev' into 'master'
d71310e Merge branch 'fix_import' into 'dev'
e990229 [FIX] fix lmgc90 module import in pre_lmgc
6400b4b [FIX] fix vtk module import
8d1b6cf [FIX] import vtk module instead of import all of vtk module
1c9f1a3 Merge branch 'fd_fix_PRPLx' into 'dev'
5dc5300 correction bug read_ini PRPLx
c004eb7 Merge branch 'fd_fix_DR' into 'dev'
4afabd9 correction erreur diagonal resolution
a17faef Merge branch 'fix_compil' into 'dev'
710a15f [COMPIL] fix stand_alone compilation
c59f955 Merge branch 'fd_fix_restart' into 'dev'
092a4fb some modifications to be more clear
edfb94b Merge branch 'fd_fix_coro' into 'dev'
8ff40be maj get_nodes pour F. Perales
20bd83e modifs xqs_wet 3D et F. Perales
d849504 modifs pour le coro 2D, correction diagonal resolution
91b93d9 Merge branch 'frozar_python_vtk_for_dev' into 'dev'
80ba483 [CHIPY] add a warning when an unavailable function is called
d186f70 [CHIPY] Create the file 'ChiPy/src/macro/config.py' to store the variable 'is_vtk_display'.         This module of configuration is used in:          * 'ChiPy/src/macro/chipy.py'          * 'ChiPy/src/macro/vtk_display.py'         Depending on the value of 'config.is_vtk_display', functions which call         vtk function are enable or not.
3337080 Merge branch 'jenkins_novisu_for_dev' into 'dev'
7ef0a42 [PRE_LMGC] Add a new module to parse argument from command line: novisu mode.            Disable the execution of 'visuAvatars()' directly inside the function.
c5a13b0 Merge branch 'fd_fix_plpl_nc' into 'dev'
b65a30a prise en compte modifs de FC qui introduit la normale au candidat
6c3e045 maj
4cc7b10 first fix
deac932 Merge branch 'fix_parameters' into 'dev'
ed4ba71 [FIX] some error in parameters module and automatic initialization of dictinnaries in chipy.Initialize
71a5904 Merge branch 'debug_omp' into 'dev'
9684b45 [FIX] some local variables missed the private OMP variable
14d9aba Merge branch 'POLYG' into 'dev'
634d36b bcp de bugs !
f73d369 Merge branch 'parameters' into 'dev'
bd36139 [DEV] use array size when checking parameter id validity, update doxygen, and only xxxx string for unknown id
3816195 [FIX] typos
7b6cb1e [FIX] complete accessor (even for unused maps) and same ordering of parameters definition/use in all files
50fe325 [FIX] correct association within body_type, contactor_type and interaction_type parameters
31d1fc0 [FIX] correct association within dime_mode parameters
68bd362 [FIX] fix error message
c822249 [DEV] use a pre-allocated array to store all possible name of parameters
e0588f9 [FIX] fix some minor error in parameters module
0faa5fb [DEV] creating some config dictionnaries to get LMGC90 parameters
6a6d32c [FIX] forgot to add parameters module interface to pylmgc90
e84a693 [DEV] adding accessor on 'parameters' module
065162c Merge branch 'doc' into 'dev'
d035fda [DOC] updated *doxy2swig.py* can indiferently used with python 2 or 3
da8fdd5 [FIX] use correct Python executable within subprocess call of Python itself
4e95846 [DOC] adding some reminder of Doxygen syntax within 'coding rules' section of sphinx dev
3859f16 [DOC] attemp to improve syntax of docstring in sphinx doc
0f0b0f0 [DOC] changing ' to " in Doxygen
8150772 [DOC] add an ugly sed+regex command to generate nicer docstrings
46d3e92 [DOC] update doxy2swig.py file
5c53049 Merge branch 'fd_bugfix' into 'dev'
acc9300 correction bug read_ini ptpt3 ; mauvaise gestion big_polyr
42f15f9 Merge branch 'POLYG' into 'dev'
86b1f13 display iter check
f7f5c07 bug remove global_distance
76e1fea remove global_distance
f4cb80a re-bug sur la tab visu des Big POLYG
c8a62f6 bug sur la tab visu des Big POLYG
4db0b25 periodic in non convex
6112564 clean double contact
c1bc1ce some comments
484c5ec more bugs!
3a14f1e encore et encore ...
96d376d bug bug ...
b68e4f4 la suite ...
a7cf909 debut ...
81d01f9 Merge branch 'fd_bugfix' into 'dev'
7fdf021 correction bug spcd pour de vrai
a4fe380 correction bug spcd
7b29c7c Merge branch 'fd_fixbug' into 'dev'
e7dcaa3 modifs detection PRPR + corrections mineures
a34797d Merge branch 'readme' into 'dev'
f997a44 [DOC] fix markdown syntax
59a2814 Merge branch 'readme' into 'dev'
0ad52e7 [DOC] Update section of README from centos 6.6 to centos 7
0d53eff [DOC] fix readme file
39e9aee [DOC] fix brief doxygen keyword typo
74feb77 [COMPIL] add gfortran compilation flags to allow long line
e3763ec Merge branch 'fd_fixbug' into 'dev'
d1b01f6 correction bug
04d29d9 Merge branch 'fd_ajouts' into 'dev'
d30ee44 Core/src/contact_3D/mod_PRPRx.f90
c05ba68 correction bug periodic si une seule boite
0a3eee2 modif pour detection big polyr et diverses corrections
47b970b Merge branch 'compilation_flags' into 'dev'
53708f8 [COMPIL] fix compilation of standalone
1490d17 relecture par fd
f698a80 [CMAKE] remove contrib/linearAlgebra useless directory
39cda3c [CMAKE] moving MUMPs from contribs/linearAlgebra to contribs/ directory
1f4132f [DOC] documenting cmake implementation
1c34e46 [CMAKE] remove obsolte macro
cba94e6 [CMAKE] fix first detection of Python header location
657740b [CMAKE] remove useless macro setting LAPACK compilation flags
083631b [CMAKE] remove LAPACK sources and only relies on the one found on the system
23c12bb [CMAKE] better handling of python interpretor/library/header user defined or automatically detected
88b7cb5 [CMAKE] fix error in MUMPs compilation flags
84ffb8c [CMAKE] caching values of flags for all library within CMakeCache.txt
474d869 [CMAKE] fix forgot include
c5e38f1 [CMAKE] specific compilation flag management for library compiled as internal project
8e27218 [CMAKE] compilation flags for the contribs are now defined in main CMakeLists.txt and fix compilation of MUMPs with BUILD_LAPACK
97597d7 [CMAKE] build all lapack libraries (not only double fonctions) and use of specific compiler options
47343ee [CMAKE] add profiling OPT option and fix compilation flags to be independent for each contrib
1f8029f Merge branch 'fd_ajouts' into 'dev'
4e5e88d nettoyage print
3595be4 modif dans polyr_wireframe (passage angle pour elimination noeuds sur cotes), ajout setcontactorcolor
20be93e Merge branch '2016.rc4' into 'dev'
bd15bce Merge branch 'dev' into 'master'
ed992f2 Merge branch 'dev' into 'master'
1197b55 Merge branch 'dev' into 'master'
ae6c187 Merge branch 'dev' into 'master'

git-subtree-dir: src
git-subtree-split: ff3860fb85fba1dcbe0ea9f6cd02a0180b5d2d09

2016 release candidate 5

eed7b01 add basic python tutorial

git-subtree-dir: examples
git-subtree-split: eed7b013bf71aff0fdd0194ea8de04bafae70ae5

Merge examples

c315cae maj notebooks
212a33f maj
b187a5d correct ComputeField before UpdateBulk in Pre examples
762edf1 remove sys.path.append from all examples
005bd6b add mecaMAILx_ComputeField before UpdateStep
3404940 command name change
941451a maj
757e441 modifs notebooks
dba1b41 nettoyage
ae4c4dd ajout notebook
be0cfcd exemple de treilli en elements BARxx

git-subtree-dir: examples
git-subtree-split: c315caecbc2e09c8fcfd36ecb0cec242c0d16cdf

Merge examples

498f08b fix compilation flags settings
50b169a default value of frequency in macro function WriteOut*
555e5d8 Merge branch 'fd_fix_doc' into 'dev'
a5ad6fd suite
090d785 modif doc
6ae4f73 Merge branch 'fd_fixes' into 'dev'
e00fce2 correction bug affichage PRPL et modif gestion frottement czm si initial friction
666ccfc Merge branch 'Regul' into 'dev'
678d776 normal regularization for NORMAL_COUPLED_DOF
ca4ea89 remove regularization for NORMAL_COUPLED_DOF
396d8f3 Add regularization for COUPLED_DOF laws
b9d9ff4 Merge branch 'fd_bili' into 'dev'
0f21ff4 loi MP3_CZM_THER
7e627b0 Merge branch 'Regul' into 'dev'
7ffc272 Add regul for IQS laws
ff81e99 Merge branch 'fd_fix_mbs' into 'dev'
7bcc119 one more fix
e8a14d0 Merge branch 'fd_fix_mbs' into 'dev'
a8708aa suite de suite de modifs
97f97b7 suite de suite de modifs
4f0104a suite modifs
e71e820 gestion mixte objets lmgc90 et mbs
5cba6ce Merge branch 'fix_doc' into 'dev'
acdf408 [DOC] Add missing pictures.
d3c4995 [DOC] Minor corrections.
9e59124 Merge branch 'fd_fix_bug' into 'dev'
2ec6215 fix more bugs added by frozar suite
9612f1c fix more bugs added by frozar
ecb0012 Merge branch 'fd_fix_bug' into 'dev'
0c30a2b correction petit oubli
dec33d2 Merge branch 'pre_list_default_val' into 'dev'
925cd89 [PRE] Remove the default value [] for any argument in python: generally not the desired behavior.
1fed708 Merge branch 'API_StartCollection' into 'dev'
c12e4ec fix import error of ddm_utils when vtk python module is not available
4b70ea1 change startCollection arguments order and default values for consistent call
8d1661c Merge branch 'fix_display' into 'dev'
4d572bb add a fake interaction when necessary to have the same number of files than rigid/tact/etc, add a new ptc display (experimental)
REVERT: bd15bce Merge branch 'dev' into 'master'
REVERT: ed992f2 Merge branch 'dev' into 'master'
REVERT: 1197b55 Merge branch 'dev' into 'master'
REVERT: ae6c187 Merge branch 'dev' into 'master'

git-subtree-dir: src
git-subtree-split: 498f08b2662476bcd2910242227e689d76e89ac9