container.md

@@ -4,28 +4,28 @@ Important notice: in the following a generic name `lmgc90_user_xxxx` is used in
 
 _To come..._
 
-# Singularity
+# Apptainer/Singularity
 
-Here are provided some very basics directions on how to use LMGC90 in a Singularity container.  
+Here are provided some very basics directions on how to use LMGC90 in a Apptainer (formerly Singularity) container.  
 On how to install and use Singularity properly, check their [official website](https://apptainer.org/).
 
 For a direct use, download the image file:
+* [lmgc90_user_2025_rc2.sif](https://seafile.lmgc.univ-montp2.fr/f/5f07db4f0da5405baed0/?dl=1)
 * [lmgc90_user_2025_rc2.sif](https://seafile.lmgc.univ-montp2.fr/f/2d491427303640218a7f/?dl=1)(md5sum e4fb0e5fad0b9fc07062effbceef90a0)
 * [lmgc90_user_2025_rc1.sif](https://seafile.lmgc.univ-montp2.fr/f/ae579e69cac749a6938b/?dl=1)(md5sum e305fb305dafce88bfa2e806dc891ae4)
 * [lmgc90_user_2024.sif](https://seafile.lmgc.univ-montp2.fr/f/6c0a172ff64b4efc9ff5/?dl=1) (md5sum 3456a4f6cec9fba8529a505db31ffbc0)
-* [lmgc90_user_2024_rc1.sif](https://seafile.lmgc.univ-montp2.fr/f/0213f8323051431d8744/?dl=1) (md5sum e58a398352a64b41567e0aaf816863df)
 
 On a server or computer with singularity installed, you can directly use the
 singularity image to run a single command with:
 ```cmd
 cd path_to_example
-singularity run lmgc90_user_xxxx.sif python command.py
+apptainer run lmgc90_user_xxxx.sif python command.py
 ```
 
 It is preferred to stay in the same image ; for example in order to
 run several python commands:
 ```cmd
-singularity shell lmgc90_user_xxxx.sif
+apptainer shell lmgc90_user_xxxx.sif
 python gen_sample.py --novisu && python command.py
 exit
 ```
@@ -64,7 +64,7 @@ From: ubuntu:noble
 ```
 Then the image file can be created with:
 ```cmd
-singularity build --fakeroot lmgc90_user_xxxx.sif lmgc90.def
+apptainer build --fakeroot lmgc90_user_xxxx.sif lmgc90.def
 ```