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Update container authored by Rémy Mozul's avatar Rémy Mozul
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...@@ -7,10 +7,8 @@ Here are provided some very basics directions on how to use LMGC90 in a Singular ...@@ -7,10 +7,8 @@ Here are provided some very basics directions on how to use LMGC90 in a Singular
On how to install and use Singularity properly, check their [official website](https://sylabs.io/guides/3.6/user-guide/). On how to install and use Singularity properly, check their [official website](https://sylabs.io/guides/3.6/user-guide/).
For a direct use, download the image file: For a direct use, download the image file:
* [lmgc90_user_2023_rc1.sif](https://seafile.lmgc.univ-montp2.fr/f/1c75255d95f5460c9dee/?dl=1)
* [lmgc90_user_2022.sif](https://seafile.lmgc.univ-montp2.fr/f/12555c58cde943139552/?dl=1) * [lmgc90_user_2022.sif](https://seafile.lmgc.univ-montp2.fr/f/12555c58cde943139552/?dl=1)
* [lmgc90_user_2022_rc1.sif](https://seafile.lmgc.univ-montp2.fr/f/f4893573742242c08d7a/?dl=1)
* [lmgc90_user_2021.sif](https://seafile.lmgc.univ-montp2.fr/f/df2a8b99d59d4055add3/?dl=1)
* [lmgc90_user_2021_rc1.sif](https://seafile.lmgc.univ-montp2.fr/f/5c8dd98a597042aa96ad/?dl=1)
On a server or computer with singularity installed, you can directly use the On a server or computer with singularity installed, you can directly use the
singularity image to run a single command with: singularity image to run a single command with:
...@@ -33,7 +31,7 @@ to create a `lmgc90.def` file (beware to beforehand adapt the path ...@@ -33,7 +31,7 @@ to create a `lmgc90.def` file (beware to beforehand adapt the path
to the source directory of lmgc90 in the `files` section: to the source directory of lmgc90 in the `files` section:
```file ```file
Bootstrap: docker Bootstrap: docker
From: ubuntu:focal From: ubuntu:jammy
%files %files
lmgc90_user_xxxx /root/lmgc90 lmgc90_user_xxxx /root/lmgc90
...@@ -47,7 +45,7 @@ From: ubuntu:focal ...@@ -47,7 +45,7 @@ From: ubuntu:focal
export DEBIAN_FRONTEND=noninteractive export DEBIAN_FRONTEND=noninteractive
apt update && apt -y upgrade apt update && apt -y upgrade
apt install -y git cmake gcc g++ gfortran liblapack-dev swig python3-dev python3-numpy cython3 python-is-python3 apt install -y git cmake gcc g++ gfortran liblapack-dev swig python3-dev python3-numpy cython3 python-is-python3
apt install -y python3-scipy python3-matplotlib python3-pandas python3-vtk7 apt install -y python3-scipy python3-matplotlib python3-pandas python3-vtk9 python3-igraph
apt install -y libhdf5-dev hdf5-tools python3-h5py apt install -y libhdf5-dev hdf5-tools python3-h5py
# build the sources # build the sources
...@@ -71,7 +69,7 @@ On how to install and use Docker properly, check their [official website](https: ...@@ -71,7 +69,7 @@ On how to install and use Docker properly, check their [official website](https:
To build an image, use the following content to create a `docker_lmgc90` file. To build an image, use the following content to create a `docker_lmgc90` file.
```file ```file
FROM ubuntu:focal FROM ubuntu:jammy
# install packages # install packages
RUN apt update -y RUN apt update -y
...@@ -79,7 +77,7 @@ RUN apt upgrade -y ...@@ -79,7 +77,7 @@ RUN apt upgrade -y
RUN DEBIAN_FRONTEND=noninteractive apt-get install -y tzdata RUN DEBIAN_FRONTEND=noninteractive apt-get install -y tzdata
RUN apt install -y git cmake gcc g++ gfortran liblapack-dev swig python3-dev python3-numpy cython3 python-is-python3 RUN apt install -y git cmake gcc g++ gfortran liblapack-dev swig python3-dev python3-numpy cython3 python-is-python3
RUN apt install -y python3-scipy python3-matplotlib python3-pandas python3-vtk7 RUN apt install -y python3-scipy python3-matplotlib python3-pandas python3-vtk9 python3-igraph
RUN apt install -y libhdf5-dev hdf5-tools python3-h5py RUN apt install -y libhdf5-dev hdf5-tools python3-h5py
# get the sources # get the sources
... ...
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