| ... | ... | @@ -7,10 +7,8 @@ Here are provided some very basics directions on how to use LMGC90 in a Singular |
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On how to install and use Singularity properly, check their [official website](https://sylabs.io/guides/3.6/user-guide/).
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For a direct use, download the image file:
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* [lmgc90_user_2023_rc1.sif](https://seafile.lmgc.univ-montp2.fr/f/1c75255d95f5460c9dee/?dl=1)
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* [lmgc90_user_2022.sif](https://seafile.lmgc.univ-montp2.fr/f/12555c58cde943139552/?dl=1)
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* [lmgc90_user_2022_rc1.sif](https://seafile.lmgc.univ-montp2.fr/f/f4893573742242c08d7a/?dl=1)
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* [lmgc90_user_2021.sif](https://seafile.lmgc.univ-montp2.fr/f/df2a8b99d59d4055add3/?dl=1)
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* [lmgc90_user_2021_rc1.sif](https://seafile.lmgc.univ-montp2.fr/f/5c8dd98a597042aa96ad/?dl=1)
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On a server or computer with singularity installed, you can directly use the
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singularity image to run a single command with:
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| ... | ... | @@ -33,7 +31,7 @@ to create a `lmgc90.def` file (beware to beforehand adapt the path |
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to the source directory of lmgc90 in the `files` section:
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```file
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Bootstrap: docker
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From: ubuntu:focal
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From: ubuntu:jammy
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%files
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lmgc90_user_xxxx /root/lmgc90
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| ... | ... | @@ -47,7 +45,7 @@ From: ubuntu:focal |
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export DEBIAN_FRONTEND=noninteractive
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apt update && apt -y upgrade
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apt install -y git cmake gcc g++ gfortran liblapack-dev swig python3-dev python3-numpy cython3 python-is-python3
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apt install -y python3-scipy python3-matplotlib python3-pandas python3-vtk7
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apt install -y python3-scipy python3-matplotlib python3-pandas python3-vtk9 python3-igraph
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apt install -y libhdf5-dev hdf5-tools python3-h5py
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# build the sources
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| ... | ... | @@ -71,7 +69,7 @@ On how to install and use Docker properly, check their [official website](https: |
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To build an image, use the following content to create a `docker_lmgc90` file.
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```file
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FROM ubuntu:focal
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FROM ubuntu:jammy
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# install packages
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RUN apt update -y
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| ... | ... | @@ -79,7 +77,7 @@ RUN apt upgrade -y |
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RUN DEBIAN_FRONTEND=noninteractive apt-get install -y tzdata
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RUN apt install -y git cmake gcc g++ gfortran liblapack-dev swig python3-dev python3-numpy cython3 python-is-python3
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RUN apt install -y python3-scipy python3-matplotlib python3-pandas python3-vtk7
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RUN apt install -y python3-scipy python3-matplotlib python3-pandas python3-vtk9 python3-igraph
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RUN apt install -y libhdf5-dev hdf5-tools python3-h5py
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# get the sources
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| ... | ... | |
