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Update container
authored
Apr 06, 2023
by
Rémy Mozul
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@@ -7,10 +7,8 @@ Here are provided some very basics directions on how to use LMGC90 in a Singular
On how to install and use Singularity properly, check their
[
official website
](
https://sylabs.io/guides/3.6/user-guide/
)
.
For a direct use, download the image file:
*
[
lmgc90_user_2023_rc1.sif
](
https://seafile.lmgc.univ-montp2.fr/f/1c75255d95f5460c9dee/?dl=1
)
*
[
lmgc90_user_2022.sif
](
https://seafile.lmgc.univ-montp2.fr/f/12555c58cde943139552/?dl=1
)
*
[
lmgc90_user_2022_rc1.sif
](
https://seafile.lmgc.univ-montp2.fr/f/f4893573742242c08d7a/?dl=1
)
*
[
lmgc90_user_2021.sif
](
https://seafile.lmgc.univ-montp2.fr/f/df2a8b99d59d4055add3/?dl=1
)
*
[
lmgc90_user_2021_rc1.sif
](
https://seafile.lmgc.univ-montp2.fr/f/5c8dd98a597042aa96ad/?dl=1
)
On a server or computer with singularity installed, you can directly use the
singularity image to run a single command with:
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@@ -33,7 +31,7 @@ to create a `lmgc90.def` file (beware to beforehand adapt the path
to the source directory of lmgc90 in the
`files`
section:
```
file
Bootstrap: docker
From: ubuntu:
focal
From: ubuntu:
jammy
%files
lmgc90_user_xxxx /root/lmgc90
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@@ -47,7 +45,7 @@ From: ubuntu:focal
export DEBIAN_FRONTEND=noninteractive
apt update && apt -y upgrade
apt install -y git cmake gcc g++ gfortran liblapack-dev swig python3-dev python3-numpy cython3 python-is-python3
apt install -y python3-scipy python3-matplotlib python3-pandas python3-vtk
7
apt install -y python3-scipy python3-matplotlib python3-pandas python3-vtk
9 python3-igraph
apt install -y libhdf5-dev hdf5-tools python3-h5py
# build the sources
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@@ -71,7 +69,7 @@ On how to install and use Docker properly, check their [official website](https:
To build an image, use the following content to create a
`docker_lmgc90`
file.
```
file
FROM ubuntu:
focal
FROM ubuntu:
jammy
# install packages
RUN apt update -y
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@@ -79,7 +77,7 @@ RUN apt upgrade -y
RUN DEBIAN_FRONTEND=noninteractive apt-get install -y tzdata
RUN apt install -y git cmake gcc g++ gfortran liblapack-dev swig python3-dev python3-numpy cython3 python-is-python3
RUN apt install -y python3-scipy python3-matplotlib python3-pandas python3-vtk
7
RUN apt install -y python3-scipy python3-matplotlib python3-pandas python3-vtk
9 python3-igraph
RUN apt install -y libhdf5-dev hdf5-tools python3-h5py
# get the sources
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